Publications

Carlisle et al., 2015

Carlisle et al., 2015

Carlisle et al., 2015

Carlisle et al., 2012

Carlisle et al., 2011

Carlisle & Starr, 2010

Carlisle & Starr, 2009

*Graduate student publication, ** Postdoctoral researcher publication, ***Undergraduate publication

59) **Pinti, J., Shatley, M., Huntley, H., Carlisle, A.B., and Oliver, M.J., (In Review). The interplay between animal location accuracy and the decorrelation length scale of environmental variables when investigating environmental selection in marine organisms. Journal of Animal Ecology.

58) Dunn, N., Curnick, D.J., Carbone, C., Carlisle, A.B., Chapple, T.K., Dowell, R., Ferretti, F., Jacoby, D.M., Schallert, R.J., Steyaert, M. and Tickler, D.M., 2023. Environmental DNA helps reveal reef shark distribution across a remote archipelago. Ecological Indicators, 154, p.110718.

57) *Oleynik, H.A., Bizzarro, J.J., Hale, E.A., and Carlisle, A.B. (In Press) Environmental drivers of biogeography and community structure in a Mid-Atlantic estuary. Oecologia.

56) Chang, C., Drazen, J.C., Chiang, W., Madigan, D.J., Carlisle, A.B., Hsu, H., Ho, Y, and Popp, B.N. (2023). Ontogenetic and seasonal shifts in diets of sharptail sunfish (Masturus lanceolatus) in waters off Taiwan. Marine Ecology Progress Series, 715, pp.113-127.
 
55) Tickler, D.M., Carlisle, A.B., Meeuwig, J.J., Chapple, T.K., Curnick, D., Dale, J.J., Castleton, M.J., Schallert, R.J., and Block, B.A. (2023). Pop-up archival tags reveal environmental influences on the vertical movements of silvertip sharks (Carcharhinus albimarginatus). Marine Ecology Progress Series 717, pp. 85-105.
 
54) Arnoldi, N.S., Litvin, S.Y., Madigan, D.J., Micheli, F. and Carlisle, A. (2023). Multi-taxa marine isoscapes provide insight into large-scale trophic dynamics in the North Pacific. Progress in Oceanography, 213, p.103005.
 
53) **Pinti, J., Shatley, M., Carlisle, A.B., Block, B.A. and Oliver, M.J., (2022). Using pseudo-absence models to test for environmental selection in marine movement ecology: the importance of sample size and selection strength. Movement Ecology, 10(1), pp.1-17.
 
52) *Roose, R., Oliver, M., Haulsee, D., Breece, M., Carlisle, A., and Fox, D. (2022). The sociality of Atlantic sturgeon and sand tiger sharks in an estuarine environment. Animal Behaviour, 193, pp.181-191.
 
51) Andrzejaczek, S., Lucas, T.C., Goodman, M.C., Hussey, N.E., Armstrong, A.J., Carlisle, A., Coffey, D.M., Gleiss, A.C., Huveneers, C., Jacoby, D.M., Meekan, M.G., … and Curnick, D. (2022). Diving into the vertical dimension of elasmobranch movement ecology. Science Advances, 8(33), p.eabo1754.
 
50) Dale, J.J., Brodie, S., Carlisle, A.B., Castleton, M., Hazen, E.L., Bograd, S.J. and Block, B.A., (2022). Global habitat loss of a highly migratory predator, the blue marlin (Makaira nigricans). Diversity and Distributions, 28(9), pp.2020-2034.
 
49) Queiroz, N., Humphries, N.E., Couto, A., Vedor, M., Da Costa, I., Sequeira, A.M., Mucientes, G., Santos, A.M., Abascal, F.J., Abercrombie, D.L. and Abrantes, K., …Carlisle, A.B., …and Sims, D.W. (2021). Reply to: Shark mortality cannot be assessed by fishery overlap alone. Nature, 595 (7866), pp.E8-E16.
 
48) Queiroz, N., Humphries, N.E., Couto, A., Vedor, M., Da Costa, I., Sequeira, A.M., Mucientes, G., Santos, A.M., Abascal, F.J., Abercrombie, D.L. Abrantes, K.,… Carlisle, A.B.,… and Sims, D.W. (2021) Reply to: Caution over the use of ecological big data for conservation. Nature, 595(7866), pp.E20-E28.
 
47) Jacoby, D.M., Ferretti, F., Freeman, R., Carlisle, A.B., Chapple, T.K., Curnick, D.J., Dale, J.J., Schallert, R.J., Tickler, D. and Block, B.A. (2020). Shark movement strategies influence poaching risk and can guide enforcement decisions in a large, remote marine protected area. Journal of Applied Ecology, 57(9), pp.1782-1792.
 
46) Carlisle, A.B., Allan, E.A., Kim, S.L., Meyer, L., Port, J., Scherrer, S. and O’Sullivan, J. (2021) Integrating multiple chemical tracers to elucidate the diet and habitat of Cookiecutter Sharks. Scientific Reports, 11(1), pp.1-16.
 
45) Chapple, T.K., Tickler, D., Roche, R.C., Bayley, D.T., Gleiss, A.C., Kanive, P.E., Jewell, O.J., Jorgensen, S.J., Schallert, R., Carlisle, A.B. and Pilly, J.S. (2021) Ancillary data from animal-borne cameras as an ecological survey tool for marine communities. Marine Biology, 168(7), pp.1-13.
 
44) Madigan, D.J., Arnoldi, N.S., Hussey, N.E. and Carlisle, A.B. (2021) An illicit artisanal fishery for North Pacific white sharks indicates frequent occurrence and high mortality in the Gulf of California. Conservation Letters, 14(4), p.e12796.
 
43) Madigan, D.J., Richardson, A.J., Carlisle, A.B., Weber, S.B., Brown, J. and Hussey, N.E. (2021) Water column structure defines vertical habitat of twelve pelagic predators in the South Atlantic. ICES Journal of Marine Science, 78(3), pp.867-883.
 
42) Madigan, D.J., Shipley, O.N., Carlisle, A.B., Dewar, H., Snodgrass, O.E. and Hussey, N.E. (2021) Isotopic tracers suggest limited trans-oceanic movements and regional residency in North Pacific blue sharks (Prionace glauca). Frontiers in Marine Science, 8, p.653606.
 
41) Williamson, M.J., Tebbs, E.J., Dawson, T.P., Curnick, D.J., Ferretti, F., Carlisle, A.B., Chapple, T.K., Schallert, R.J., Tickler, D.M., Harrison, X.A. and Block, B.A. (2021) Analyzing detection gaps in acoustic telemetry data to infer differential movement patterns in fish. Ecology and evolution, 11(6), pp.2717-2730.
 
40) Curnick, D.J., Andrzejaczek, S., Jacoby, D.M., Coffey, D.M., Carlisle, A.B., Chapple, T.K., Ferretti, F., Schallert, R.J., White, T., Block, B.A. and Koldewey, H.J., 2020. Behavior and ecology of silky sharks around the Chagos archipelago and evidence of Indian Ocean wide movement. Frontiers in Marine Science, 7, p.596619.
 
39) Le Croizier, G., Lorrain, A., Sonke, J.E., Hoyos-Padilla, E.M., Galván-Magaña, F., Santana-Morales, O., Aquino-Baleytó, M., Becerril-García, E.E., Muntaner-López, G., Ketchum, J. and Block, B., Carlisle, A.B., Jorgensen, S.J., Besnard, L., Jung, A., and Schaal, G. (2020). The twilight zone as a major foraging habitat and mercury source for the great white shark. Environmental Science & Technology, 54(24), pp.15872-15882.
 
38) Hays, G.C., Koldewey, H.J., Andrzejaczek, S., Attrill, M.J., Barley, S., Bayley, D.T., Benkwitt, C.E., Block, B., Schallert, R.J., Carlisle, A.B. and Carr, P. (2020). A review of a decade of lessons from one of the world’s largest MPAs: conservation gains and key challenges. Marine Biology, 167(11), pp.1-22.
 
37) Chiang, W.C., Chang, C.T., Madigan, D.J., Carlisle, A.B., Musyl, M.K., Chang, Y.C., Hsu, H.H., Su, N.J., Sun, C.L., Ho, Y.S. and Tseng, C.T.  (2020) Stable isotope analysis reveals feeding ecology and trophic position of black marlin off eastern Taiwan. Deep Sea Research Part II: Topical Studies in Oceanography, 175, p.104821.
 
36) Andrzejaczek, S., Chapple, T.K., Curnick, D.J., Carlisle, A.B., Castleton, M., Jacoby, D.M., Peel, L.R., Schallert, R.J., Tickler, D.M. and Block, B.A. (2020) Individual variation in residency and regional movements of reef manta rays Mobula alfredi in a large marine protected area. Marine Ecology Progress Series, 639, pp.137-153.
 
35) Carlisle, A.B., Tickler, D., Dale, J.J., Ferretti, F., Curnick, D.J., Chapple, T.K., Schallert, R.J., Castleton, M. and Block, B.A. (2019) Estimating space use of mobile fishes in a large marine protected area with methodological considerations in acoustic array design. Frontiers in Marine Science, 6: 256.
 
34) Chiang, W., Chang, Y., Chang, C., Musyl, M., Sun. C., Madigan, D., Carlisle, A., Hsu, H., Chang, Q., Nan-Jay, H., and Tseng, C. (2019) Stable isotope analysis reveals ontogenetic feeding shifts in Pacific blue marlin (Makaira nigricans) off eastern Taiwan. Journal of Fish Biology 94(6): 958-965.
 
33) Queiroz, N., Humphries, N.E., … Carlisle, A.B., … Sims, D.W. (2019). Global spatial risk assessment of sharks under the footprint of fisheries. Nature, 572(7770):461-466.
 
32) White, T.D., Ferretti, F., Kroodsma, D.A., Hazen, E.L., Carlisle, A.B., Scales, K.L., Bograd, S.J., and Block, B.A. (2019) Predicted hotspots of overlap between Pacific highly migratory fishes and industrial fishing fleets. Science Advances 5(3): p.eaau3761
 
31) Curnick, D.J., Carlisle, A.B., Gollock, M., Schallert, R.J. and Hussey, N. (2019) Evidence of dynamic resource partitioning between two sympatric reef shark species within the British Indian Ocean Territory. Journal of Fish Biology 94(4): 680-685
 
30) Lyons, K., Bigman, J.S., Kacev, D., Mull, C.G., Carlisle, A.B., Imhoff, J.L., Anderson, J.M., Weng, K.C., Shaw, A.L., Cave, E., Gunn, T.R., Lowe, C.G., Brill, R.W. and Bedore, C.N. (2019) Bridging disciplines to advance elasmobranch conservation: applications of physiological ecology. Conservation Physiology 7(1): coz011.
 
29) Tickler, D., Carlisle, A.B., Chapple, T., Dale, J., Schallert, R., and Block, B. (2019) Potential detection of illegal fishing by passive acoustic telemetry. Animal Biotelemetry 7(1): 1
 
28) Huveneers, C., Apps, K., Becceri-Garcia, E., Bruce, B., Butcher, P., Carlisle, A., Chapple, T., Christiansen, H., Cliff, G., Curtiss, T., Daly-Engel, T., Dewar, H., Dicken, M., Domeier, M., Duffy, C., Ford, R., French, G., Francis, M., Galvan-Magana, F., Garcia-Rodriguez, E., Gennari, E., Graham, B., Hayden, B., Hoyos-Padilla, M., Hussey, N., Jewell, O., Jorgensen, S., Kock, A., Lowe, C., Lyons, K., Meyer, L., Oelofse, G., Oñate-González, E., Oosthuizen, H., O’Sullivan, J., Ramm, K., Skomal, G., Sloan, S., Smale, M., Sosa-Nishizaki, O., Spreone, E., Tamburin, E, Towner, A., Wcisel, M., Weng, and K., Werry, J. (2018). Future research directions on the ‘elusive’ white shark. Frontiers in Marine Science 5: 455
 
27) Harrison, A., Costa, D., Winship, A., Benson, S., Bograd, S., Carlisle, A., Dewar, H., Dutton, P., Jorgensen, S., Antolos, M., Kohin, S., Mate, B., Robinson, P., Schaefer, K., Shaffer, S., Shillinger, G,. Simmons, S., Weng, K., Gierde, K., andBlock, B. (2018). The political biogeography of migratory marine predators. Nature Ecology & Evolution 2(10): 1571.
 
26) Bird, C.S., Veríssimo, A., Magozzi, S., Abrantes, K.G., Aguilar, A., Al-Reasi, H., Barnett, A., Bethea, D.M., Biais, G., Borrell, A., Bouchoucha, M., Boyle, M., Brooks, E.J., Brunnschweiler, J., Bustamante, P., Carlisle, A., … and Trueman, C.N. (2018) A global perspective on the trophic geography of sharks. Nature Ecology & Evolution 2: 299-305.
 
25) Bizzarro, J.J., Carlisle, A.B., Smith, W.D. and Cortés, E., 2017. Diet composition and trophic ecology of Northeast Pacific ocean sharks. In Advances in marine biology (Vol. 77, pp. 111-148). Academic Press.
 
24) Lyons, K., Carlisle, A.B. and Lowe, C.G., 2017. Influence of ontogeny and environmental exposure on mercury accumulation in muscle and liver of male Round Stingrays. Marine environmental research 130: 30-37.
 
23) *Coffey, D.M., Carlisle, A.B., Hazen, E.L. and Block, B.A., 2017. Oceanographic drivers of the vertical distribution of a highly migratory, endothermic shark. Scientific reports, 7(1): 10434.
 
22) Madigan, D.J., Baumann, Z., Carlisle, A.B., Snodgrass, O., Dewar, H. and Fisher, N.S., 2017. Isotopic insights into migration patterns of Pacific bluefin tuna in the eastern Pacific Ocean. Canadian Journal of Fisheries and Aquatic Sciences, 75: 260-270.
 
21) White, T.D., Carlisle, A.B., Kroodsma, D.A., Block, B.A., Casagrandi, R., De Leo, G.A., Gatto, M., Micheli, F., and McCauley, D.J. (2017) Assessing the effectiveness of a large marine protected area for reef shark conservation. Biological Conservation, 207: 64-71.
 
20) Carlisle, A.B., Litvin, S., Madigan, D., Bigman, J., Lyons, K., Ibarra, M. and Bizzarro, J. (2017) Interactive effects of urea and lipid confound stable isotope results in chondrichthyan fishes. Canadian Journal of Fisheries and Aquatic Sciences, 74(3): 419-428.
 
19) Briscoe, D.K., Hobday, A.J., Carlisle, A.B., Scales, K., Paige-Eveson, J., Arrizabalaga, H., Druon, J.N., and Fromentin, J. (2016) Ecological bridges and barriers in pelagic ecosystems. Deep-Sea Research Part II 140: 182-192
 
18) Chapple, T.K., Chambert, T., Kanive, P.E., Jorgensen, S.J., Anderson, S.D., Carlisle, A.B., Rotella, J.J., and Block, B.A. (2016) A novel application of multi-event modeling to efficiently estimate spatial segregation among sex and age classes of a highly migratory pelagic vertebrate. Ecology 97(12): 3494-3502.
 
17) Carlisle, A.B., Kochevar, R., Arostegui, M., Ganong, J., Castleton, M., Schratwieser, J., and Block, B.A. (2016) Influence of temperature and oxygen on the distribution of blue marlin (Makaira nigricans) in the Central Pacific. Fisheries Oceanography 26(1): 34-48.
 
16) Hazen, E.L., Carlisle, A.B., Wilson, S.G., Ganong, J.E., Castleton, M.R., Bograd, S.J., and Block, B.A. (2016) Quantifying overlap between the Deepwater Horizon oil spill and predicted bluefin tuna spawning habitat in the Gulf of Mexico. Scientific Reports 6: 33824.
 
15) Madigan, D.J., Carlisle, A.B., Gardner, L.D., Jayasundara, N., Micheli, F., Schaefer, K.M., Fuller, D.W., and Block, B.A. (2015). Assessing niche width of endothermic fish from genes to ecosystem. Proceedings of the National Academy of Sciences 112(27): 8350-8355.
 
14) Hughes, B.B., Levey, M.D., Fountain, M.C., Carlisle, A.B., Chavez, F.P., and Gleason, M.G. (2015) Climate mediates hypoxic stress on fish diversity and nursery function at the land–sea interface. Proceedings of the National Academy of Sciences 112(26): 8025-8030.
 
13) Carlisle, A.B., Goldman, K.J., Litvin, S.Y., Madigan, D.J., Bigman, J., Swithenbank, A., Kline, T. and Block, B.A. (2015) Stable isotope analysis of vertebrae reveals ontogenetic changes in habitat in an endothermic shark. Proceedings of the Royal Society B 292: 20141446.
 
12) Carlisle, A.B., Litvin, S., Hazen, E., Madigan, D., Goldman, K., Lea, B. and Block, B. (2015) Reconstructing habitat use by juvenile salmon sharks links upwelling to strandings in the California Current. Marine Ecology Progress Series 525: 217-228.
 
11) Chang, C-C, C., Jang-Liaw, N-H., Lin, Y-S., Carlisle, A.B., Hsu, H., Liao, Y-C, and Shao, K-T (2014) The complete mitochondrial genome of the salmon shark, Lamna ditropis (Chondrichthyes, Lamnidae). Mitochondrial DNA 27(1): 316-317.
 
10) Madigan, D., Baumann, Z., Carlisle, A.B., Hoen, D., Popp, B., Dewar, H., Snodgrass, O., Block, B. and Fisher, N. (2014) Reconstructing trans-oceanic migration of a Pacific predator using a chemical tracer toolbox. Ecology 95(6): 1674-1683.
 
9) Field, J., Litvin, S., Carlisle, A.B., Stewart, J., Gilly, W., and Ruiz-Cooley, R.I. (2014) Stable isotope analysis of Humboldt squid prey preferences should be interpreted with caution: Comment on Miller et al. (2014). Marine Ecology Progress Series 500: 281-285.
 
8) Lyons, D. Carlisle, A.B., Preti, A., Blasius, M., Mull, C., Winkler, C., O’Sullivan, J., and Lowe, C. (2013) Effects of trophic ecology and habitat use on maternal transfer of contaminants in four species of young of the year lamniform sharks. Marine Environmental Research 90: 27-38.
 
7) Madigan, D.J., Litvin, S.Y., Popp, B.N., Carlisle, A.B., Farwell, C.J., and Block, B.A. (2012) Turnover rates and isotopic trophic discrimination factors in the endothermic teleost, Pacific bluefin tuna (Thunnus orientalis). PLoS ONE 7(11): e49220.
 
6) Madigan D.J., Carlisle A.B., Dewar H., Snodgrass O.E., Litvin S.Y., Micheli F., Block B.A.
(2012) Stable isotope analysis challenges wasp-waist food web assumptions in an upwelling
pelagic ecosystem. Scientific Reports 2: 654. 
 
5) Carlisle, A.B., Kim S.L., Semmens, B.X., Madigan, D.J., Jorgensen, S.J., Perle, C.R., Anderson, S.D., Chapple, T.K., Kanive, P.E., Block, B.A. (2012) Using stable isotope analysis to understand the migration and trophic ecology of northeastern Pacific white sharks (Carcharodon carcharias).  PLoS ONE 7(2): e30492.
 
4) Carlisle, A.B., Perle, C.R., Goldman, K.J. and Block, B.A. (2011) Seasonal changes in depth distribution of salmon sharks (Lamna ditropis) in Alaskan waters: implications for foraging ecology.  Canadian Journal of Fisheries and Aquatic Sciences 68: 1905-1921.
 
3) Carlisle, A.B. and Starr, R.M. (2010) Tidal movements of female leopard sharks (Triakis semifasciata) in Elkhorn Slough, California.  Environmental Biology of Fishes 89:31-45.
 
2) Carlisle, A.B. and Starr, R.M. (2009) Habitat use, residency, and seasonal distribution of female leopard sharks (Triakis semifasciata) in Elkhorn Slough, California.  Marine Ecology Progress Series 380: 213-228.
 
1) Carlisle, A.B., King, A., Brennan, J.S. and Cailliet, G.M.C. (2007) Long-term trends in catch composition from elasmobranch derbies in Elkhorn Slough, California.  Marine Fisheries Review 69 (1-4): 25–45.

Updated January 2024