Publications

Carlisle et al., 2015

Carlisle et al., 2015

Carlisle et al., 2015

Carlisle et al., 2012

Carlisle et al., 2011

Carlisle & Starr, 2010

Carlisle & Starr, 2009

• Carlisle, A.B., Allan, E.A., Kim, S.L., Meyer, L., Port, J., Scherrer, S., O'Sullivan, J. (2021) Integrating multiple chemical tracers to elucidate the diet and habitat of Cookiecutter Sharks. Scientific Reports.  DOI:10.1038/s41598-021-89903-z.
• Curnick, D.J, Andrzejaczek, S., Jacoby, D.MP., Coffey, D., Carlisle, A.B.,...Collen, B. (2020) Behavior and ecology of silky sharks around the Chagos archipelago and evidence of Indian Ocean wide movement. Frontiers in Marine Science. DOI:10.3389/fmars.2020.596619.
  
• Chiang, W.C., Chang, C-T., Madigan, D.J., Carlisle, A.B.,...Tseng, C-T. (2020) Deep Sea Research Part II Topical Studies in Oceanography. DOI:10.1016/j.dsr2.2020.104821.
  
• Andrzejaczek, S., Chapple, T.K., Curnick, D.J, Carlisle, A.B.,...Block, B.A. (2020) Individual variation in residency and regional movements of reef manta rays Mobula alfredi in a large Marine Protected Area. Marine Ecology Progress Series. DOI:10.3354/meps13270.
• Queiroz, N., Humphries, N.E., Couto, A., Vedor, M., da Costa, I.,...Carlisle, A.B.,...Simpson, S.J. (2019) Global spatial risk assessment of sharks under the footprint of fisheries. Nature. DOI: 10.1038/s41586-019-1444-4.
• Lyons, K., Bigman, J.S., Kacev, D., Mull, C.G., Carlisle, A.B., Imhoff, J.L, Anderson, J.M., Weng, K.C., Galloway, A.S., Cave, E., Gunn, T.R., Lowe, C.G., Brill, R.W., Bedore, C.N. (2019) Bridging disciplines to advance elasmobranch conservation: applications of physiological ecology. Conservation Physiology. DOI: 10.1093/conphys/coz011.
• Carlisle, A.B., Tickler, D.M., Dale, J.J., Ferretti, F., Curnick, D.J., Chapple, T.K., Schallert, R.J., Castleton, M., Block, B.A. (2019) Estimating space use of mobile fishes in a large marine protected area with methodological considerations in acoustic array design. Frontiers in Marine Science. DOI: 10.3389/fmars.2019.00256
• White, T.D., Ferretti, F., Kroodsma, D.A., Hazen, E.L., Carlisle, A.B., Scales, K.L., Bograd, S.J., Block, B.A. (2019) Predicted hotspots of overlap between highly migratory fishes and industrial fishing fleets in the northeast Pacific. Science Advances. DOI: 10.1126/sciadv.aau3761.
• Curnick, D.J., Carlisle, A.B., Gollock, M., Schallert, R.J., Hussey, N.E. (2019) Evidence for dynamic resource partitioning between two sympatric reef shark species within the British Indian Ocean Territory. Journal of Fish Biology. DOI: 10.1111/jfb.13938.
• Chang, C.T., Chiang, W.C., Chang, Y.C., Musyl, M.K., Sun, C.L., Madigan, D.J., Carlisle, A.B., Hsu, H.H., Chang, Q.X., Su, N.J., Ho, Y.S, Tseng, C.T. (2019) Stable isotope analysis reveals ontogenetic feeding shifts in Pacific blue marlin (Makaira nigricans) off eastern Taiwan. Journal of Fish Biology. DOI: 10.1111/jfb.13902
• Tickler, D.M., Carlisle, A.B., Chapple, T.K., Curnick, D.J., Dale, J.J., Schallert, R.J., Block, B.A. (2019) Potential detection of illegal fishing by passive acoustic telemetry. Animal Biotelemetry 7(1): 1.
• Huveneers, C., Apps, K., Becerril-Garcia, E.E., Bruce, B., Butcher, B.A., Carlisle, A.B., ...Werry, J.M. (2018) Future research directions on the “elusive” white shark. Frontiers in Marine Science. DOI: 10.3389/fmars.2018.00455.
• Harrison, A.L., Costa, D.P., Winship, A.J., Benson, S.R., Bograd, S.J., Antolos, M., Carlisle, A.B., ....Block, B.A. (2018) The political biogeography of migratory marine predators. Nature Ecology and Evolution. DOI: 10.1038/s41559-018-0646-8.
• Bird, C.S., Veríssimo, A., Magozzi, S., Abrantes, K.G., Aguilar, A., Al-Reasi, H., ...Carlisle, A.B.,...Trueman, C.N. (2018) A global perspective on the trophic geography of sharks. Nature Ecology and Evolution 2 (2018): 299-305.
• Coffey, D.M., Carlisle, A.B., Hazen, E.L., and Block, B.A. (2017) Oceanographic drivers of the vertical distribution of a highly migratory, endothermic shark. Scientific Reports 7: 10434. DOI:10.1038/s41598-017-11059-6.
• Bizzarro, J.J., Carlisle, A.B., Smith, W.D. and Cortés, E. (2017) Diet Composition and Trophic Ecology of Northeast Pacific Ocean Sharks. Advances in Marine Biology.
• Lyons, K., Carlisle, A.B., Lowe, C.G. (2017) Influence of ontogeny and environmental exposure on mercury accumulation in muscle and liver of male Round Stingrays. Marine Environmental Research. DOI: 10.1016/j.marenvres.2017.07.004.
• Madigan, D.J., Baumann, Z., Carlisle, A.B., Snodgras, O., Dewar, H., Fisher, N. (2017) Isotopic insights into migration patterns of Pacific Bluefin tuna in the eastern Pacific Ocean. Canadian Journal of Fisheries and Aquatic Sciences. DOI: 10.1139/cjfas-2016-0504.
• White, T.D., Carlisle, A.B., Kroodsma, D.A., Block, B.A., Casagrandi, R., De Leo, G.A., Gatto, M., Micheli, F., & McCauley, D.J. (2017) Assessing the effectiveness of a large marine protected area for reef shark conservation. Biological Conservation. DOI: 10.1016/j.biocon.2017.01.009.
• Briscoe, D.K., Hobday, A.J., Carlisle, A.B., Scales, K., Paige-Eveson, J., Arrizabalaga, H., Druon, J.N., Fromentin, J. (2016) Ecological bridges and barriers in pelagic ecosystems. Deep-Sea Research Part II. DOI: 10.1016/j.dsr2.2016.11.004.
• Carlisle, A.B., Litvin, S., Madigan, D., Bigman, J., Lyons, K., Ibarra, M. & Bizzarro, J. (2016) Interactive effects of urea and lipid confound stable isotope results in chondrichthyan fishes. Canadian Journal of Fisheries and Aquatic Sciences. DOI: 10.1139/cjfas-2015-0584.
• Chapple, T.K., Chambert, T., Kanive, P.E., Jorgensen, S.J., Anderson, S.D., Carlisle, A.B., Rotella, J.J., & Block, B.A. (2016). A novel application of multi-event modeling to efficiently estimate spatial segregation among sex and age classes of a highly migratory pelagic vertebrate. Ecology. DOI: 10.1002/ecy.1589.
• Carlisle, A.B., Kochevar, R., Arostegui, M., Ganong, J., Castleton, M., Schratwieser, J., & & Block, B.A. (2016) Influence of temperature and oxygen on the distribution of blue marlin (Makaira nigricans) in the Central Pacific. Fisheries Oceanography. DOI: 10.1111/fog.12183.
• Hazen, E.L., Carlisle, A.B., Wilson, S.G., Ganong, J.E., Castleton, M.R., Bograd, S.J., & Block, B.A. (2016). Quantifying overlap between the Deepwater Horizon oil spill and predicted bluefin tuna spawning habitat in the Gulf of Mexico. Scientific Reports 6: 33824.
• Madigan, D.J., Carlisle, A.B., Gardner, L.D., Jayasundara, N., Micheli, F., Schaefer, K.M., Fuller, D.W., & Block, B.A. (2015). Assessing niche width of endothermic fish from genes to ecosystem. Proceedings of the National Academy of Sciences 112, no. 27 (2015): 8350-8355.
• Hughes, B.B., Levey, M.D., Fountain, M.C., Carlisle, A.B., Chavez, F.P., & Gleason, M.G. (2015) Climate mediates hypoxic stress on fish diversity and nursery function at the land–sea interface. Proceedings of the National Academy of Sciences 112, no. 26 (2015): 8025-8030.
• Carlisle, A.B., Goldman, K.J., Litvin, S.Y., Madigan, D.J., Bigman, J., Swithenbank, A., Kline, T. & Block, B.A. (2015) Stable isotope analysis of vertebrae reveals ontogenetic changes in habitat in an endothermic shark. Proceedings of the Royal Society B 292: 20141446.
• Carlisle, A.B., Litvin, S., Hazen, E., Madigan, D., Goldman, K., Lea, B. & Block, B. (2015) Reconstructing habitat use by juvenile salmon sharks links upwelling to strandings in the California Current. Marine Ecology Progress Series 525: 217-228.
• Chang, C-C, C., Jang-Liaw, N-H., Lin, Y-S., Carlisle, A.B., Hsu, H., Liao, Y-C, & Shao, K-T (2014). The complete mitochondrial genome of the salmon shark, Lamna ditropis (Chondrichthyes, Lamnidae). Mitochondrial DNA, DOI: 10.3109/19401736.2014.892095.
• Madigan, D., Baumann, Z., Carlisle, A.B., Hoen, D., Popp, B., Dewar, H., Snodgrass, O., Block, B. & Fisher, N. (2014) Reconstructing trans-oceanic migration of a Pacific predator using a chemical tracer toolbox. Ecology 95(6): 1674-1683.
• Field, J., Litvin, S., Carlisle, A.B., Stewart, J., Gilly, W., & Ruiz-Cooley, R.I. (2014). Stable isotope analysis of Humboldt squid prey preferences should be interpreted with caution: Comment on Miller et al. (2014). Marine Ecology Progress Series 500: 281-285.
• Lyons, D. Carlisle, A.B., Preti, A., Blasius, M., Mull, C., Winkler, C., O’Sullivan, J., & Lowe, C. (2013). Effects of trophic ecology and habitat use on maternal transfer of contaminants in four species of young of the year lamniform sharks. Marine Environmental Research 90: 27-38.
• Madigan, D.J., Litvin, S.Y., Popp, B.N., Carlisle, A.B., Farwell, C.J., & Block, B.A. (2012) Turnover rates and isotopic trophic discrimination factors in the endothermic teleost, Pacific bluefin tuna (Thunnus orientalis). PLoS ONE 7(11): e49220.
• Madigan D.J., Carlisle A.B., Dewar H., Snodgrass O.E., Litvin S.Y., Micheli F., Block B.A. (2012) Stable isotope analysis challenges wasp-waist food web assumptions in an upwelling pelagic ecosystem. Scientific Reports 2: 654.
• Carlisle, A.B., Kim S.L., Semmens, B.X., Madigan, D.J., Jorgensen, S.J., Perle, C.R., Anderson, S.D., Chapple, T.K., Kanive, P.E., Block, B.A. (2012). Using stable isotope analysis to understand the migration and trophic ecology of northeastern Pacific white sharks (Carcharodon carcharias). PLoS ONE 7(2): e30492.
• Carlisle, A.B., Perle, C.R., Goldman, K.J. & Block, B.A. (2011). Seasonal changes in depth distribution of salmon sharks (Lamna ditropis) in Alaskan waters: implications for foraging ecology. Canadian Journal of Fisheries and Aquatic Sciences 68: 1905-1921.
• Carlisle, A.B. & Starr, R.M. (2010). Tidal movements of female leopard sharks (Triakis semifasciata) in Elkhorn Slough, California. Environmental Biology of Fishes 89:31-45.
• Carlisle, A.B. & Starr, R.M. (2009). Habitat use, residency, and seasonal distribution of female leopard sharks (Triakis semifasciata) in Elkhorn Slough, California. Marine Ecology Progress Series 380: 213-228.
• Carlisle, A.B., King, A., Brennan, J.S. & Cailliet, G.M.C. 2007. Long-term trends in catch composition from elasmobranch derbies in Elkhorn Slough, California. Marine Fisheries Review 69 (1-4): 25–45.

Updated August 2019